rs33116924 SNP Detail

Summary

• ID
  rs33116924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84822015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTTGCAA GAGACACTGG GGAAAACAGC AAGGACCCAG
  CACGCCTGTC AGCAGCAGAG TAGGGTGAAC AGCCCCAACA TCCTGACAGT CTCTTGGTCA
  Y
  TGCCCTCAGC TCCATGGTAA TCCGGGACCT GACCCTGCGC AGTGCTGCCA GCTTCGGCTC
  CTTCCACCTC ATCCGGCTGC TCTATGACGA GTACATGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46237296	mCV23392703	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss60642573	NES16272397	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T		C	T	T	C		T
ss145371851	ENSMUSSNP2838000	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322747559	CHEV_8_86619285	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33116924					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642573	NES16272397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84822015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf15	DDB1 and CUL4 associated factor 15			1686 bp downstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)			Intron
				Noncoding-Transcript-Variant