rs33116944 SNP Detail

Summary

• ID
  rs33116944
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGTCCT AGTGTGCCAT
  ACTGGCTCTC CTGATTCCTT CTTGGAGGCG GTGACCCCAG AGTTATATCA AGGCATTTAG
  GAGATGGAAA GGCGTTAGGG TGGAACTTGG GCTCTAATCC TCCCACCACC AGGGCGGCGC
  TAGAAGCAAG CGGCAGGCAT GCTCGGAGCC TCTCTAGCCA CCTCTTCCCA GCCTGGGTCC
  S
  GGAGAGCGAC GAGGATCGCA AGCGTCGCGG GCGGGGAAGC GATGTGGGCT GTACTAAGTC
  ACCCAATCTC TTGGGGAGGC GCAGACTCGG GACGGAGTAA TCTCTACGCC TTACGGTTGC
  CTCCAGGAGT TTACGCCCTC TGTGAAATGC AAAATGCAGA TTCCCTCTCA GGTCTCTTCT
  GCTGCTCCCT TTCCAGTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258399	NES11552948	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33116944					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258399	NES11552948	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			mRNA-UTR
Cdiptos	CDIP transferase, opposite strand			Coding-NonSynonymous
				mRNA-UTR
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			1050 bp downstream
Rr368439	regulatory region 368439			within coordinates
Rr655656	regulatory region 655656			311 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			492 bp upstream
Tssr69140	transcription start site region 69140			1719 bp downstream
Tssr69141	transcription start site region 69141			464 bp downstream
Tssr69142	transcription start site region 69142			191 bp upstream
Tssr69143	transcription start site region 69143			250 bp upstream
Tssr69144	transcription start site region 69144			319 bp upstream
Tssr69145	transcription start site region 69145			344 bp upstream
Tssr69146	transcription start site region 69146			436 bp upstream
Tssr69147	transcription start site region 69147			459 bp upstream
Tssr69148	transcription start site region 69148			522 bp upstream
Tssr74865	transcription start site region 74865			672 bp upstream
Tssr74866	transcription start site region 74866			245 bp upstream
Tssr74867	transcription start site region 74867			241 bp upstream
Tssr74868	transcription start site region 74868			4 bp downstream
Tssr74869	transcription start site region 74869			36 bp downstream
Tssr74870	transcription start site region 74870			44 bp downstream