rs33116946 SNP Detail

Summary

• ID
  rs33116946
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTGGGTC CCGGAGAGCG ACGAGGATCG CAAGCGTCGC
  GGGCGGGGAA GCGATGTGGG CTGTACTAAG TCACCCAATC TCTTGGGGAG GCGCAGACTC
  S
  GGACGGAGTA ATCTCTACGC CTTACGGTTG CCTCCAGGAG TTTACGCCCT CTGTGAAATG
  CAAAATGCAG ATTCCCTCTC AGGTCTCTTC TGCTGCTCCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258402	NES11552949	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33116946					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258402	NES11552949	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575349 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	mRNA-UTR
Cdiptos	CDIP transferase, opposite strand	Coding-NonSynonymous
Cpgi19724	CpG island 19724	within coordinates
Gm73941	predicted gene, 73941	1139 bp downstream
Rr368439	regulatory region 368439	within coordinates
Rr655656	regulatory region 655656	400 bp distal
Rr655657	regulatory region 655657	within coordinates
Tssr2401	transcription start site region 2401	403 bp upstream
Tssr69140	transcription start site region 69140	1808 bp downstream
Tssr69141	transcription start site region 69141	553 bp downstream
Tssr69142	transcription start site region 69142	102 bp upstream
Tssr69143	transcription start site region 69143	161 bp upstream
Tssr69144	transcription start site region 69144	230 bp upstream
Tssr69145	transcription start site region 69145	255 bp upstream
Tssr69146	transcription start site region 69146	347 bp upstream
Tssr69147	transcription start site region 69147	370 bp upstream
Tssr69148	transcription start site region 69148	433 bp upstream
Tssr74865	transcription start site region 74865	761 bp upstream
Tssr74866	transcription start site region 74866	334 bp upstream
Tssr74867	transcription start site region 74867	330 bp upstream
Tssr74868	transcription start site region 74868	72 bp upstream
Tssr74869	transcription start site region 74869	46 bp upstream
Tssr74870	transcription start site region 74870	35 bp upstream