rs33116949 SNP Detail

Summary

• ID
  rs33116949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCCCTCT CAGGTCTCTT CTGCTGCTCC CTTTCCAGTT
  TCTTCCTTTG CGGCTGGCTC TCGAGTCTCT CCCCTCCCCT GTGCGTTGGT ACGAGCCGAA
  S
  CCTAGGGGCC CCGGCAGGAA AAGGAAGCAG GCCGGCCTTA AAGGGACCTC AGCCATTATT
  TATTTAATTA ATTTATTTAT ATTTAAAAGC CGCTCTCTCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47258405	NES11552950	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33116949					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47258405	NES11552950	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575519 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	mRNA-UTR
Cdiptos	CDIP transferase, opposite strand	Coding-Synonymous
Cpgi19724	CpG island 19724	within coordinates
Gm73941	predicted gene, 73941	1309 bp downstream
Rr368439	regulatory region 368439	38 bp downstream
Rr655656	regulatory region 655656	570 bp distal
Rr655657	regulatory region 655657	within coordinates
Tssr2401	transcription start site region 2401	233 bp upstream
Tssr69140	transcription start site region 69140	1978 bp downstream
Tssr69141	transcription start site region 69141	723 bp downstream
Tssr69142	transcription start site region 69142	50 bp downstream
Tssr69143	transcription start site region 69143	within coordinates
Tssr69144	transcription start site region 69144	60 bp upstream
Tssr69145	transcription start site region 69145	85 bp upstream
Tssr69146	transcription start site region 69146	177 bp upstream
Tssr69147	transcription start site region 69147	200 bp upstream
Tssr69148	transcription start site region 69148	263 bp upstream
Tssr74865	transcription start site region 74865	931 bp upstream
Tssr74866	transcription start site region 74866	504 bp upstream
Tssr74867	transcription start site region 74867	500 bp upstream
Tssr74868	transcription start site region 74868	242 bp upstream
Tssr74869	transcription start site region 74869	216 bp upstream
Tssr74870	transcription start site region 74870	205 bp upstream