rs33117531 SNP Detail

Summary

• ID
  rs33117531
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:104308068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG AATCTGACTG CTTTGTGGAA
  W
  TTTGCCTTTG TAAAATAACT AGCCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47259132	NES11403923	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	T	A	A	A	A	A	A	T	T	A
ss138019010	ENSMUSSNP6460183	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33117531					SNP	A	A	T	A	A	T	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259132	NES11403923	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104308068 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	Intron
Tssr114848	transcription start site region 114848	1321 bp downstream
Tssr114849	transcription start site region 114849	1288 bp downstream
Tssr114850	transcription start site region 114850	1244 bp downstream
Tssr114851	transcription start site region 114851	1171 bp downstream
Tssr114852	transcription start site region 114852	1139 bp downstream
Tssr114853	transcription start site region 114853	939 bp downstream
Tssr114854	transcription start site region 114854	769 bp downstream
Tssr114855	transcription start site region 114855	1255 bp upstream
Tssr117574	transcription start site region 117574	900 bp upstream
Tssr117575	transcription start site region 117575	1291 bp downstream