rs33118666 SNP Detail

Summary

• ID
  rs33118666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGAGA CTGAGCCACT
  AACCAAAGAA CACACATGGG CTGGAGTGAG GCCCCCTGGC ACATTTTTAG TAGACATGTA
  GTCAGTCTAC ATGTGGGCCC CTCAATAACT GGAACCAGGG CTGCCCCTAA AGCTGTAGCC
  TGACTGTGTT ATCCATTTCC CAATAGGGCT GACTTGTCTG GCCTCAGTGA GAGAGGATGC
  R
  CCTAATCTGG CACAGACTTG ATTTGACAGG GTGGGAGGAT ATATAGGGGG ACCACATCCT
  CTCAGAAGAA AAAGGGCAGG GGATAGAAGG TTTTTGTAAG CAGTGGGGAG ACAAGGAGAG
  GGGCAGTGTT TGGAATGTAA ATAACTATAA ATAAAAAATT TAAAAGGTGA AACAATAATT
  AAAATGTTAA GAGTCAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45739929	mCV23844869	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss144728579	ENSMUSSNP3348651	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33118666					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352878 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	1203 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	1250 bp upstream
Rr378823	regulatory region 378823	104 bp upstream
Tssr54686	transcription start site region 54686	1251 bp upstream
Tssr54687	transcription start site region 54687	1226 bp upstream