rs33118915 SNP Detail

Summary

• ID
  rs33118915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91066929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA GCCTGAGGCG ACAGAAGCCA
  R
  GAACTGCTTC AGAAGCCCAG GCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45239629	mCV24870081	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146923709	ENSMUSSNP1073185	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320392006	CHEV_2_91076741	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33118915					SNP	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91066929 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	562 bp upstream
Cpgi11902	CpG island 11902	within coordinates
Ddb2	damage specific DNA binding protein 2	within coordinates
Rr397126	regulatory region 397126	388 bp upstream
Rr560675	regulatory region 560675	964 bp distal
Rr560676	regulatory region 560676	291 bp proximal
Rr560677	regulatory region 560677	562 bp proximal
Rr560678	regulatory region 560678	693 bp proximal
Rr560679	regulatory region 560679	1010 bp proximal
Rr560680	regulatory region 560680	1396 bp proximal
Tssr18884	transcription start site region 18884	526 bp upstream
Tssr18885	transcription start site region 18885	588 bp upstream
Tssr25176	transcription start site region 25176	256 bp downstream
Tssr25177	transcription start site region 25177	285 bp downstream
Tssr25178	transcription start site region 25178	293 bp downstream
Tssr25179	transcription start site region 25179	341 bp downstream
Tssr25180	transcription start site region 25180	383 bp downstream