rs33119059 SNP Detail

Summary

• ID
  rs33119059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104308748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT GTGTGAGATG AGGACTCATT
  R
  CCCATGTGTT AGTCCACAAG TTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47259150	NES11403929	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		A	G	G
ss138019028	ENSMUSSNP1906663	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33119059					SNP	G	A	G	G	G	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259150	NES11403929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104308748 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114849	transcription start site region 114849	1968 bp downstream
Tssr114850	transcription start site region 114850	1924 bp downstream
Tssr114851	transcription start site region 114851	1851 bp downstream
Tssr114852	transcription start site region 114852	1819 bp downstream
Tssr114853	transcription start site region 114853	1619 bp downstream
Tssr114854	transcription start site region 114854	1449 bp downstream
Tssr114855	transcription start site region 114855	575 bp upstream
Tssr114856	transcription start site region 114856	1631 bp upstream
Tssr114857	transcription start site region 114857	1643 bp upstream
Tssr114858	transcription start site region 114858	1715 bp upstream
Tssr117574	transcription start site region 117574	1580 bp upstream
Tssr117575	transcription start site region 117575	611 bp downstream