rs33119124 SNP Detail

Summary

• ID
  rs33119124
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAACATCC ATTTCTTGAG GCTGACAGCA GCTCTTGTGT
  CTCACATCCT TACGGAAGTC TAGTGGGATG AACCTCACTT TCTGTTCTCA GTACTTAGAT
  K
  TAGCTGGGTC GGCAGAAAGG AGCAGAGGGT TCCATCCCTG CTCTGGCTTT TGAGTTTCAC
  TGAGAGCAGG GGAGCAGATT GAATTTACAA TACTCCTTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39496305	mCV25231737	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss145758508	ENSMUSSNP5448960	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss325417411	CHEV_17_52041289	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33119124					SNP	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208992 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1009 bp proximal
Rr405357	regulatory region 405357	1831 bp upstream
Tssr148690	transcription start site region 148690	1956 bp downstream
Tssr148691	transcription start site region 148691	1986 bp downstream