rs33119272 SNP Detail

Summary

• ID
  rs33119272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97021743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACTGA AAAATTCAAT
  TATAGAAATA AAGGTTTTCC TCTTTGGTGG AGGAAAAAAA TGTTTGCAAA GTAGAAAAAG
  AACAAGCTAG AAAAAAGATC TGCAGGTTGG CTTCTTCGTT TCCTAAGTAA TCCTCTTGGG
  ATAAGGCACT AGAACAAGGC TATCTCGTGT TAGGACCAAA GCGACTGATG TCAGTCACAC
  Y
  ACAAGTCAGT GTCAGATCTC ACTTGGGAAG TTTACTGGGG TGGGGGGTGG GGTATGCGGA
  GGCTGCTGCT GACTGAGGGT GGAAGGGAAC CAGAGGACCC AGAGGACGGG AGAGGAGGTG
  CTGGCCTTTT ATAAGGGGAT GTAGCCCAAG TGCATGAGGA GGATTTGGGA CCCGTGGCAA
  CTGTGGCAGC TAGTGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47759332	NES11290588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	T		C
ss323116057	CHEV_9_97040109	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33119272					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47759332	NES11290588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97021743 () rs orientation: forward

Symbol	Name	Function Class
Gm57041	predicted gene, 57041	1393 bp upstream
Rr685156	regulatory region 685156	582 bp proximal
Tssr86631	transcription start site region 86631	1423 bp upstream