rs33119304 SNP Detail

Summary

• ID
  rs33119304
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:124675548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT CTTTTCTGTA GCGCGGAGAC
  W
  GAGTGAATCC ATGGGTCCAA TAAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46237485	mCV24172814	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss145836525	ENSMUSSNP3734108	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33119304					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124675548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	within coordinates
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	Intron
Rr672577	regulatory region 672577	9 bp distal
Rr672578	regulatory region 672578	446 bp proximal
Rr672579	regulatory region 672579	466 bp proximal
Rr672580	regulatory region 672580	634 bp proximal
Rr672581	regulatory region 672581	1491 bp proximal
Tssr80007	transcription start site region 80007	601 bp upstream
Tssr80008	transcription start site region 80008	637 bp upstream
Tssr83414	transcription start site region 83414	392 bp downstream