rs33120275 SNP Detail

Summary

• ID
  rs33120275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52316850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA AGACACAGCT GTGTGCTTCC
  R
  GAGTCAGGGA GGCTAGAATT AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45239074	mCV24651214	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146590351	ENSMUSSNP1324643	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320303841	CHEV_2_52282358	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33120275					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52316850 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	1964 bp upstream
Cacnb4	calcium channel, voltage-dependent, beta 4 subunit	1482 bp downstream
Cpgi11647	CpG island 11647	1680 bp distal
Rr556939	regulatory region 556939	1948 bp distal
Rr556940	regulatory region 556940	1883 bp distal
Rr556941	regulatory region 556941	1166 bp distal
Tssr494	transcription start site region 494	1895 bp upstream
Tssr17726	transcription start site region 17726	1817 bp downstream
Tssr17727	transcription start site region 17727	1592 bp downstream
Tssr24074	transcription start site region 24074	1922 bp upstream