rs33120678 SNP Detail

Summary

• ID
  rs33120678
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC AAGCAACGTT AGAGGCCACA
  S
  GGGGTGATAA GAATCAGCCA AAAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39496496	mCV22899480	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss145404943	ENSMUSSNP537801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325342194	CHEV_17_26647707	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33120678					SNP	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1739 bp distal
Gm56886	predicted gene, 56886	769 bp downstream
Rr339410	regulatory region 339410	935 bp distal
Rr392454	regulatory region 392454	129 bp upstream
Rr405113	regulatory region 405113	1657 bp downstream
Rr406958	regulatory region 406958	72 bp distal
Tssr5044	transcription start site region 5044	1798 bp downstream
Tssr5045	transcription start site region 5045	1294 bp upstream
Tssr5046	transcription start site region 5046	1241 bp upstream
Tssr5047	transcription start site region 5047	1230 bp upstream
Tssr143234	transcription start site region 143234	1988 bp downstream
Tssr143235	transcription start site region 143235	1054 bp downstream
Tssr143236	transcription start site region 143236	1021 bp downstream
Tssr143237	transcription start site region 143237	1965 bp upstream
Tssr146955	transcription start site region 146955	1880 bp upstream
Tssr146956	transcription start site region 146956	1263 bp upstream
Tssr146957	transcription start site region 146957	1193 bp upstream