rs33120705 SNP Detail

Summary

• ID
  rs33120705
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24306143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGCGGC GGGGCCGGCG
  CCTTGGCTGA CGGCCTGCTC CGCCACGGGG CTTCCGAGGC CCGCTCGACG GGGACTCCTG
  CGGCGGGCGG GGGGCCTCCG GGGCGGTTGT GTAACCGGTC TCATCCAGTT CCCCGTGAGG
  CCTGGAGCCT TCCCTTACCG TGCGGTGTCA TCTGGAGCTC TCGGAGGGAG GCTCCCGCCC
  M
  GCCGCCCTGT CACCCAAGTG GCACGAGTTG ATAAATCACC TGTCATTTAG GGCGACGCCA
  GTCACCAGTA AATAGCAGTT TTCTAAGGGT TCTGGCGCCA CTGTTAACCA AGAGGATCTC
  TTTGTGCTGT CTTTGATTTT GCCGTGTATT GGAGAAACCG CAGCATTTGG TTGAAAGGTG
  GGTTATGAAA GGCACGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45740311	mCV23730604	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss148083582	ENSMUSSNP3505048	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33120705					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24306143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	within coordinates
Gm71592	predicted gene, 71592	649 bp upstream
Klhl7	kelch-like 7	within coordinates
Rr377704	regulatory region 377704	1565 bp upstream
Rr398996	regulatory region 398996	413 bp downstream
Tssr45399	transcription start site region 45399	476 bp downstream
Tssr45400	transcription start site region 45400	447 bp downstream
Tssr50303	transcription start site region 50303	660 bp upstream