rs33120826 SNP Detail

Summary

• ID
  rs33120826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155116645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AATATTAAAA AAAATTCTTC
  Y
  CGGATTCAGT AGAGAGATGT CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45239558	mCV22920240	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148049750	ENSMUSSNP7163919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320572679	CHEV_2_155100461	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33120826					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155116645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	1311 bp proximal
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	1639 bp upstream
Rr568016	regulatory region 568016	1027 bp proximal
Rr568017	regulatory region 568017	1522 bp proximal
Tssr21073	transcription start site region 21073	1614 bp upstream
Tssr21074	transcription start site region 21074	1693 bp upstream
Tssr21075	transcription start site region 21075	1755 bp upstream
Tssr21076	transcription start site region 21076	1778 bp upstream
Tssr21077	transcription start site region 21077	1857 bp upstream
Tssr21078	transcription start site region 21078	1871 bp upstream
Tssr21079	transcription start site region 21079	1894 bp upstream
Tssr21080	transcription start site region 21080	1992 bp upstream