rs33121146 SNP Detail

Summary

• ID
  rs33121146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA GCCTTGGCAG CCCTGCACGG
  R
  CGGCTGAGGC TGCACCTGGG GTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39496875	mCV22893043	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145407191	ENSMUSSNP2685480	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325342567	CHEV_17_26758240	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33121146					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840269 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523902	regulatory region 523902	829 bp distal
Rr523903	regulatory region 523903	within coordinates
Rr523904	regulatory region 523904	165 bp proximal
Tssr143257	transcription start site region 143257	217 bp upstream