rs33121936 SNP Detail

Summary

• ID
  rs33121936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173921462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA TATTAACAGG ATAGAGATTA
  Y
  AGTTTTTAAT AATTCTTTTG GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45239836	mCV24858235	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148339433	ENSMUSSNP3127177	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320626946	CHEV_2_173905170	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33121936					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173921462 () rs orientation: forward

Symbol	Name	Function Class
D130084N16Rik	RIKEN cDNA D130084N16 gene	237 bp downstream
Rr397552	regulatory region 397552	1991 bp downstream
Rr572065	regulatory region 572065	1301 bp distal
Rr572066	regulatory region 572066	1495 bp distal
Stx16	syntaxin 16	within coordinates