rs33121951 SNP Detail

Summary

• ID
  rs33121951
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACGGGG GTATGGGGAG GACCTGGCTG TTTGAACACT
  GAAGTTGGCT GAAAGGACTT GATGGGAGAT CATGGGAAGA TCTGGATTGT CAGTCTTCCT
  S
  GTGCGTGGGA GTTAGGTGGG GTCTACTGCG GTAAAGCCAT CCAGTGTTCC TCTTGTCAAT
  GCTTTCTGAG CCATCCTACC ATCTGAGATG TGTTTGCAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45239349	mCV25127090	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss148084941	ENSMUSSNP1133396	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320582510	CHEV_2_156699674	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33121951					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715858 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	375 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	94 bp distal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1424 bp downstream