rs33122268 SNP Detail

Summary

• ID
  rs33122268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC ATTGTAGCTA TGGGGATGAT
  Y
  TTAATGGCTG GAATCTGTCC TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47259093	NES11403901	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	T	C	C	C	C	C	T	C	C
ss138018984	ENSMUSSNP5138885	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33122268					SNP	C	T	C	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259093	NES11403901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306799 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114843	transcription start site region 114843	1439 bp downstream
Tssr114844	transcription start site region 114844	1303 bp downstream
Tssr114845	transcription start site region 114845	1271 bp downstream
Tssr114846	transcription start site region 114846	1182 bp downstream
Tssr114847	transcription start site region 114847	1159 bp downstream
Tssr114848	transcription start site region 114848	52 bp downstream
Tssr114849	transcription start site region 114849	19 bp downstream
Tssr114850	transcription start site region 114850	within coordinates
Tssr114851	transcription start site region 114851	46 bp upstream
Tssr114852	transcription start site region 114852	103 bp upstream
Tssr114853	transcription start site region 114853	314 bp upstream
Tssr114854	transcription start site region 114854	457 bp upstream
Tssr117574	transcription start site region 117574	329 bp downstream