rs33122672 SNP Detail

Summary

• ID
  rs33122672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81112692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTTTT TTTTTTGAGA
  CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT
  CGAACTCAGA AATCCGCCTG CCTCTGCCTC CCGAGTGCTG GGATTAAAGG CATGCACCAC
  CATGCCCGGC TGAGTATTCT TTATTAATTC AACTGCTTGA GAGAATGTTA CGGTTGTCTC
  R
  TGTAATAACG GGTAAGCGGT CTCCAGTGGA AAGCTTCTGG ATTTTTTTTT TTCTAACCTG
  ACACAGACTA CATAATGGCT AATTCTCTGT GTCAACTTGT GTGGCTGCCA CTAACCAGAT
  ATTAGATAAG ATGTTATTTG GATGTGTCTG TGAGAGTTAT TTTTTAATGA AATTAATATT
  ACATCAGTAG ACTCTGAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39496991	mCV22308208	ABI	CRAMUS_MOUSE	f	SNP		G					A	A
ss62937175	NES17409719	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A		A	A	A	A	A	A	G
ss146076290	ENSMUSSNP1754827	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33122672					SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937175	NES17409719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81112692 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	1968 bp downstream
Rr393005	regulatory region 393005	within coordinates