rs33122996 SNP Detail

Summary

• ID
  rs33122996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCAAAACCT CATTTATCCA GGCAGAGGCA CCCTTGAACT TAGACATTTG TGGAGCTAGA
  CAGTTGACTC TCAGAAACCC GAAACCTGAA GCCTCACCTT TGTGACTCAG CAGCTGTAAA
  AGAAAAGAAA ACGAAAAAGA AATGTAGACA ATACTGGGTA TAGTGGGGCA CACCTGCCAT
  GAAGCTCTCA GGAGTTCAGG GTCATCCACA GTCACATAGG AGGAAGCCAA GTATCAAGAG
  ATTCCAATGT CCTGATCCAC TCAGGGTAGG AGGCAGCCTA GGCCCCTTGG GAACCTGCTT
  Y
  TAAAGCAACA GAACAAGTGT GGGGTGTGGG TAGTCTAGGG AGTTCTTCAG AATCCACAGT
  TCAAGGCCAG CCTAGGCTAT GTGAGACCCT CCAGAAGGAG GAAGAGGAGG AGGAAGAAGG
  AAGAGGAGGG AGATGGAGGA GAAGGAGAAA GGAGAGAAGG GAAATTAGAA AAAAAGAAGA
  AAAAAAAAAA AAAACCTCAG GCCAGGCAGT GGTGGCACAC GCCTTTAATC CCAGCACTTA
  GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC CAGGCCAGCC TGGTCTACAG AGTGAATTCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39497354	mCV22807307	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33122996					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260386 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	1385 bp downstream
Rr340009	regulatory region 340009	185 bp distal
Tssr145247	transcription start site region 145247	687 bp downstream
Tssr145248	transcription start site region 145248	661 bp downstream
Tssr145249	transcription start site region 145249	647 bp downstream
Tssr145250	transcription start site region 145250	628 bp downstream
Tssr145251	transcription start site region 145251	604 bp downstream
Tssr145252	transcription start site region 145252	590 bp downstream
Tssr145253	transcription start site region 145253	572 bp downstream
Tssr145254	transcription start site region 145254	548 bp downstream
Tssr145255	transcription start site region 145255	524 bp downstream
Tssr145256	transcription start site region 145256	508 bp upstream
Tssr145257	transcription start site region 145257	932 bp upstream
Tssr145258	transcription start site region 145258	954 bp upstream