rs33123031 SNP Detail

Summary

• ID
  rs33123031
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70354385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CGTCACCCAG GAGGTTCCCT
  W
  TAATTTGGAA GCGTTACGCT AGCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46237136	mCV22895329	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	T
ss145115925	ENSMUSSNP5941500	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		T
ss322697764	CHEV_8_72425634	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33123031					SNP	T	T	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70354385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	within coordinates
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	within coordinates
Rr400887	regulatory region 400887	within coordinates
Rr400888	regulatory region 400888	1447 bp upstream
Rr664595	regulatory region 664595	within coordinates
Rr664596	regulatory region 664596	813 bp proximal
Rr664597	regulatory region 664597	953 bp proximal
Rr664598	regulatory region 664598	1072 bp proximal
Tssk6	testis-specific serine kinase 6	449 bp upstream
Tssr2594	transcription start site region 2594	33 bp upstream
Tssr77689	transcription start site region 77689	443 bp upstream
Tssr81543	transcription start site region 81543	600 bp upstream
Tssr81544	transcription start site region 81544	78 bp upstream
Tssr81545	transcription start site region 81545	63 bp upstream
Tssr81546	transcription start site region 81546	250 bp downstream
Tssr81547	transcription start site region 81547	280 bp downstream
Tssr81548	transcription start site region 81548	1423 bp downstream