rs33123618 SNP Detail

Summary

• ID
  rs33123618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11262508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTCTT TACCAAGATA
  CTGAATACTT GCACTGAATT TGTAAATGGG TTGTAAAGTC GGGCACTGAA CTATAATCTG
  CAGCAGTATA GCATTTCCTG TTTAATGGCT CTATAAAATA GATTATAAAA GCACATGCAA
  TACTTTCCTA TGCTGATCCC AAAGGAAGGA ACTGCTTTAA GGGCTGGGCG GTATCACACA
  Y
  GTGCACACAT ATAGAAACAC ATACACACAC ATATAATAAT ACTCTTGACC AAAAAGTTCC
  TTTTGAAAAT CAATTCTACA CTCAATCACT CACCGGCATG CCTTGGAATC CTGGGTCTCC
  CTTAGGGCCT GGAACCCCCG GAGCTCCTGG CCAACCTTGA TTTCCCTTGT CACCTTTTGG
  CCCATTGATT CCTGGGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46238225	mCV23753086	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148666923	ENSMUSSNP3839531	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33123618					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11262508 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	931 bp upstream