rs33123935 SNP Detail

Summary

• ID
  rs33123935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACCATGG AGACCGGGCC ACTCCCACTC GGGGCCTGAG
  GCTGCTGCAG AACTTCACAG CCCTGCATGC AAAGCTGAAC TAGATTGCAG GAGGGGAGGG
  R
  TGGGGGTGGG GGTTCCCACC TTGCCCCTCC AGCTTAGCGC CTCCTGCTCC TGATGGTGTT
  AGAAGTATCT TGGCTCTAAG AGAAGCCTAC TGTCCCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45239960	mCV22928841	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss148112299	ENSMUSSNP1938962	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss320588295	CHEV_2_158082899	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33123935					SNP	G	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099083 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	931 bp upstream
Cpgi12591	CpG island 12591	723 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	within coordinates
Rr568713	regulatory region 568713	871 bp proximal
Rr568714	regulatory region 568714	1569 bp proximal
Rr568715	regulatory region 568715	1834 bp proximal
Tssr727	transcription start site region 727	1055 bp upstream
Tssr21302	transcription start site region 21302	902 bp upstream
Tssr21303	transcription start site region 21303	1040 bp upstream
Tssr21304	transcription start site region 21304	1062 bp upstream
Tssr21305	transcription start site region 21305	1074 bp upstream
Tssr21306	transcription start site region 21306	1097 bp upstream
Tssr27222	transcription start site region 27222	1782 bp downstream