rs33124327 SNP Detail

Summary

• ID
  rs33124327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGGCT ATTCTCTGCC
  GCCTGGTGAG CTCAAGGCTA GCCTGTAGTA TATGAGACCC CATCTTAAAA AGAGGGGAGG
  GCACAAATGG TGTCACATAT TACCTTTTCC CCGAGGGATG AAGCTGAACT CACTTGTACA
  GTGATTGTGA TTGGCATGGG GCTCCCAGTG TGGATACTGA ACTCTGAAGC CAAAGGGAGG
  R
  TAGTGTGAGT GAGTCCAGGC TGTGAGGCCT GTACTCTTCC TTCCTTCCCA TCACACCCCT
  TTCCCCATTC CAGCGCCAGG AGCTAGAAGA ATTTAAGCAG AAGATCCGGA AGCAGAAAGA
  AGAGAGACTT CTTCAAGCTG CCCAGCAGAG CTCCTGAGAC CTTCAGTTCC TCAAGTCCCA
  GCTCCCTTCC CCACCACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46237647	mCV22852709	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss61076611	NES16054589	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	A	A	G
ss148547065	ENSMUSSNP3845416	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33124327					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076611	NES16054589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1431 bp distal
Pcp2	Purkinje cell protein 2 (L7)	221 bp downstream
Pet100	PET100 homolog	within coordinates
Rr400746	regulatory region 400746	1733 bp downstream
Rr658948	regulatory region 658948	1845 bp distal
Rr658949	regulatory region 658949	1538 bp distal
Rr658950	regulatory region 658950	1683 bp distal
Rr658951	regulatory region 658951	140 bp distal
Tssr76075	transcription start site region 76075	1657 bp downstream
Tssr76076	transcription start site region 76076	1567 bp downstream
Tssr76077	transcription start site region 76077	1541 bp downstream
Tssr80202	transcription start site region 80202	1827 bp upstream
Tssr80203	transcription start site region 80203	360 bp downstream
Tssr80204	transcription start site region 80204	1419 bp downstream
Tssr80205	transcription start site region 80205	1509 bp downstream
Tssr80206	transcription start site region 80206	1771 bp downstream
Tssr80207	transcription start site region 80207	1820 bp downstream
Tssr80208	transcription start site region 80208	1839 bp downstream
Tssr80209	transcription start site region 80209	1875 bp downstream
Xab2	XPA binding protein 2	1839 bp upstream