rs33124532 SNP Detail

Summary

• ID
  rs33124532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATATTAT ATTATGTTAT ACAATTATGT TAAATAATTA
  TATAATTTAA TATATACAAT GTTATATATA ACATATTATG CATATTATAT ATAATGTTAT
  Y
  ATAATGTGTA ATTGTATATT ATATATAATT TACTTATATA TTTTATTATA TCATATATAA
  TATATCATAT ATTACATAAT ATAACACAAT ATATCATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45740063	mCV23207934	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss321496140	CHEV_5_24152318	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs33124532					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851498 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1184 bp upstream
Tssr45438	transcription start site region 45438	1037 bp downstream
Tssr45439	transcription start site region 45439	1030 bp downstream
Tssr45440	transcription start site region 45440	1017 bp downstream
Tssr45441	transcription start site region 45441	1000 bp downstream
Tssr45442	transcription start site region 45442	994 bp downstream