rs33124935 SNP Detail

Summary

• ID
  rs33124935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97115263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAGCCC GTGTTTAACT
  GCATCCTTGC CATGCTGCCC ATTTTCTGCA TGTTCTAAGA TGACTTGTGT CCTATGTATA
  TTATGAAGAA CTTCTCAACA GAGGCCCTTT AGTGAACACC ATAGCTGGCT GGAGCATAGA
  CATCTATCAT CACTTAGTGA GTGTCACCCG GAACATAGAC ATCTATCACT TCTGTGTCAC
  Y
  CATAAAGGCT CAGTCTCACA TCCTTCACAG AATTTAAGTT TTTTAAAATT ATTACTTCTA
  AAATTCCTTT TTATGACATG ACCTCCTTCT CTATGATCTG GCCCTCAGTG TTACAGATGT
  TGGATGTTTT GCTTTGTGCT GAAAACAACT TTTCAAAGTT GTTTCCATTG TTAAAATCCC
  TATTTTCTTT GCCTGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47759555	NES11287190	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T		C
ss323117109	CHEV_9_97133629	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33124935					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47759555	NES11287190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97115263 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	605 bp downstream
Tssr2982	transcription start site region 2982	957 bp downstream