rs33124938 SNP Detail

Summary

• ID
  rs33124938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97116045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGAAA GAAGAGGATT
  AGATGGGCTT CTGGGAAGTT CGGAGGAAAG AATCATGGCC CACCTCAGCT AAGCCGCCAA
  TGAGGTTGAG AAACTCTTGG AAATCTAGCT GCCCGTCACA GTTGAGGTCC AGCTTCTTCA
  TCATGTGGTC AAGATACTGG GGTCCTTCTG GTTCCTTGTG AAGGCGGCCA GCTCCGTGTT
  Y
  ATGAAGGAAA GGGATTCAGT TTTTGAGAGT TAAGGGTTGT TTCTATCCTT CCCACTGTAC
  TTTTGGAAAA CAGCAATCAG GGATTCGATG TATCTCTCAG TCTCTGTAGG CTTCTTTGCC
  AAGTTGAGGA GCGAGGTCCG ACTGTGACTT CGGCTGACGG TGGCTGGGAC AGGAGTGGCT
  GGGGGGTGTT TTAAAAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47759558	NES11287196	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	C		T
ss323117115	CHEV_9_97134411	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33124938					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47759558	NES11287196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97116045 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	within coordinates
Rr383804	regulatory region 383804	1624 bp upstream
Tssr2982	transcription start site region 2982	175 bp downstream