rs33124940 SNP Detail

Summary

• ID
  rs33124940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97116136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTTGGA AATCTAGCTG
  CCCGTCACAG TTGAGGTCCA GCTTCTTCAT CATGTGGTCA AGATACTGGG GTCCTTCTGG
  TTCCTTGTGA AGGCGGCCAG CTCCGTGTTT ATGAAGGAAA GGGATTCAGT TTTTGAGAGT
  TAAGGGTTGT TTCTATCCTT CCCACTGTAC TTTTGGAAAA CAGCAATCAG GGATTCGATG
  Y
  ATCTCTCAGT CTCTGTAGGC TTCTTTGCCA AGTTGAGGAG CGAGGTCCGA CTGTGACTTC
  GGCTGACGGT GGCTGGGACA GGAGTGGCTG GGGGGTGTTT TAAAAGCTCT TTATGCCCTT
  GACTTCACTG TCTGGATCAT CTCAGAGTTT CCACCTGTAG AGCGTGTATC CTCTGAGAAT
  TGATCACACT GTCTTCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47759560	NES11287198	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	C		T
ss323117118	CHEV_9_97134502	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33124940					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47759560	NES11287198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97116136 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	within coordinates
Rr383804	regulatory region 383804	1533 bp upstream
Tssr2982	transcription start site region 2982	84 bp downstream