rs33125072 SNP Detail

Summary

• ID
  rs33125072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56915479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA ATACTAAAGT CACAATCATG
  R
  GCCACCATAC CCAGTCCTTT CTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss39497283	mCV24357885	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss145807841	ENSMUSSNP1816412	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs33125072					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56915479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	843 bp proximal
Gm56912	predicted gene, 56912	1273 bp upstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	within coordinates
Rr340044	regulatory region 340044	within coordinates
Rr370299	regulatory region 370299	1163 bp upstream
Tssr145313	transcription start site region 145313	1406 bp upstream
Tssr148822	transcription start site region 148822	1196 bp downstream
Tssr148823	transcription start site region 148823	1210 bp downstream
Tssr148824	transcription start site region 148824	1325 bp downstream
Tssr148825	transcription start site region 148825	1344 bp downstream
Tssr148826	transcription start site region 148826	1449 bp downstream
Tssr148827	transcription start site region 148827	1479 bp downstream
Tssr148828	transcription start site region 148828	1509 bp downstream