rs33125421 SNP Detail

Summary

• ID
  rs33125421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152951338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGCCTG CCACACCCAG
  GCCTGGCTAT AGGTGTATAT CTGAGTCCCC TCTTTTACAT CTTCCCCTGC CTTCCCAGCT
  GAACCCCTAA CAGGCGTACA TCCAACTCCA GAACCTCTTA CACAAAGACC ACAATCTACC
  ACCATCTCCT CTGTGTGACA CTGGGGCATG TCACTGGCTA CTCTCTGGAT TCCAGCTTCC
  R
  ACTCTGTAAA ATGGGCTGTT TTACATTCAT CTGAAGCTGA GTTGTCCAGA GAAGGGGAGC
  AGTGCTGCTG GGTACTGGAG AGAGAGCCTG GTTTGTCTGT GCCTCTGTTT GCATAGCTGC
  AGGATGGAGA TGGTAAGAGG ACAGGTTGAA TGTTCCCTAT CCAAACTACA CCTGATCAGA
  GGGGTTTAGG ATTTCCGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45240135	mCV22910317	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss147984323	ENSMUSSNP5552485	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33125421					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152951338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	266 bp distal
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	1380 bp distal
Rr567551	regulatory region 567551	940 bp distal
Rr567552	regulatory region 567552	890 bp distal
Rr567553	regulatory region 567553	726 bp distal
Tssr20863	transcription start site region 20863	1745 bp downstream
Tssr20864	transcription start site region 20864	1709 bp downstream
Tssr20865	transcription start site region 20865	934 bp downstream
Tssr20866	transcription start site region 20866	876 bp downstream
Tssr26882	transcription start site region 26882	396 bp upstream