rs33125986 SNP Detail

Summary

• ID
  rs33125986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192803216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACTGG CCACTATGGG
  CAAACAGATC AAGAGAGCTA AGTAAGACAT GAGTAACAAC ACACGACATT CAGAGTAACT
  GATGACTCAC AGATCATCCC CTTCTCTCAC ACAGGCAAGA GGGTCCAGAC AACAGTTACA
  CAAGCAGTGG GCAGCTTGGA GCCTGACTTC ATACCTGAGA GCTGTCTCTA GTGTTTCCCT
  Y
  ACTGTTCCAA GGAACACGTC TCAGGAGAGT CAAAATTACT TTAGAATTGT TCAAATAACG
  TCAGCAACGT GATCCGTCAC AAGGGTATGT CTGTCTTGGA ATTGATCCAT CTTCTCCCTT
  CCTCTCTCCC CACTGCTTTC TCTCTCAGAG ACGTACCCAG CAGGACTCAA GGGATACTAC
  TTTGTGAAGT GAATGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46774881	NES10640411	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss320200882	CHEV_1_194947102	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33125986					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774881	NES10640411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192803216 () rs orientation: forward

Symbol	Name	Function Class
Rr367086	regulatory region 367086	1874 bp upstream
Utp25	UTP25 small subunit processome component	within coordinates