rs33126104 SNP Detail

Summary

• ID
  rs33126104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92088864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTTGACC CATCTGTTCT ATTTATAAAA GCTCACTAGA
  CTCTACTAGC AAACGTATAG GTCTGTAAGA AAATATGTTG TGGTGTTACA TGTAGTCACA
  R
  AGCATAACAA ACAGCTTGGA AAACCATTAG TAGGGAACAT GTTAGGTTAA AGAGTGAGAT
  AACAAACATG TTAAGAACAT GTTGAGAACA TGTTAAGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46237867	mCV24259343	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss50605129	NES14041031	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	G	A	A		A	A	A	A		G
ss145570206	ENSMUSSNP523956	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss322791502	CHEV_8_93886135	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33126104					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605129	NES14041031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92088864 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	1137 bp proximal
Rr191071	regulatory region 191071	265 bp distal
Rr191072	regulatory region 191072	1138 bp proximal
Tssr78731	transcription start site region 78731	1025 bp upstream