rs33127666 SNP Detail

Summary

• ID
  rs33127666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192805399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACACCT AGGCCAACCC
  ATCTGCACAG CCCACGTGCA GAGGCTTCAG AAAAGCCAGC TGGCTTCCTG CTTTTGTCCA
  GGCTCCCACA CTGTCACGGT TCACAGTTAG GATGTGGTTT CTGCTAAGAT TCCACAAATT
  CTACCTCTAC TTCTCCTCCC ACTAAAAGCC AGCAGATCTA ACTAGGCCAC ATAAGGACTC
  S
  GCTTCACCCA CGCTAAAGTG CAGCTGCAGA AAACTGGGAG AGGCAGAAAA GACTGACACC
  CGCTTGGCCT TCCCACCGGC ACAAACTGAT ATTACAGAAA CTCATGTCCA GCTGGCTGCC
  ATTTGATCAC AGGCATGGTG ACCATGGAGG GTGGGGGGGG GGGTGGCTTT GGGGCTCCTC
  TTAGTAATAA GAACACTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46774905	NES10640293	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33127666					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774905	NES10640293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192805399 () rs orientation: forward

Symbol	Name	Function Class
Rr367086	regulatory region 367086	25 bp downstream
Utp25	UTP25 small subunit processome component	within coordinates