rs33127903 SNP Detail

Summary

• ID
  rs33127903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123649299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTAAAGGG AGACGATGAC GTCTTTATCC ATGTTCCCAA
  TGTGCTCGAG TTCTTGGAGG GCTGGGATCC GGCCCAGGAC TTCCTAGTGG GAGATGTCAT
  Y
  CGCTTGGCCC GGCCCAACAG GAACACCAAA GTTAAATATT TCATCCCGTT TTCCATGTAC
  AGGGCCCGCC ACTACCCACC TTATGCAGGA GGCGGCGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45740595	mCV24599471	ABI	CRAMUS_MOUSE	f	SNP		C	C			T		C
ss60834166	NES16018834	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T		C		T	C		T	C	T		C
ss149195332	ENSMUSSNP6363466	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					C
ss321670963	CHEV_5_123961245	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33127903					SNP	C	C	C	C	T	T	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834166	NES16018834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123649299 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	within coordinates
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	846 bp downstream
Rr620215	regulatory region 620215	1847 bp distal
Rr620216	regulatory region 620216	952 bp proximal