rs33127993 SNP Detail

Summary

• ID
  rs33127993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34143043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCAGTA AGAATATCAC
  CTTTTTGAAG AGATGTGTAT TATGGGAGTG GAAGCACAGC GATACACTGG GTAGGTCAGT
  GTGGAAGTCG CCTCTGTGCC TTCCTTCTCG CTGGCTTGTG AGCCAGGCCC CCCTCCCCCC
  CAACCCCCAC GCCGGTAGAA GGAGGCAGGT ATATGAGTCA AAATCCAGTT CTCTTAAAAT
  Y
  GTTGCTCTTT ACCTCTCTAT AGATCTTTGT GTGGCAGGGC AGTGATTTTT TTTTTTTTTT
  TTTTGTCACT GAACAGAGGA ACTGGCTTCT GTCATCAACT CAGAAAACTC TGATGCCACC
  TGTTTCCCTG AAATAGGCTC TCTGAAAAGC CTTTCTGTTG TGGAGCAGGG CGTGGCCATG
  TCAGAGTTCT CCAACTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49447064	NES12599724	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33127993					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447064	NES12599724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34143043 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131025	transcription start site region 131025	1730 bp downstream
Tssr131026	transcription start site region 131026	367 bp downstream
Tssr131027	transcription start site region 131027	63 bp upstream
Tssr131028	transcription start site region 131028	164 bp upstream
Tssr131029	transcription start site region 131029	1024 bp upstream