GTACA CAGTTAGGCT TGAACTGGTC M TTTTGTCTAA GTGTGATTTC TTGCG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss45741030 | mCV22946853 | ABI | CRAMUS_MOUSE | f | SNP | C | A | C | ||
ss148929898 | ENSMUSSNP2194991 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | |||
ss321627754 | CHEV_5_101290852 | CHEVERUD | SCREENING_POP | f | SNP | C | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs33128000 | SNP | C | A | C | C | C |
Location: Chr5:101009699 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm73351 | predicted gene, 73351 | 183 bp upstream | ||||||
Gpat3 | glycerol-3-phosphate acyltransferase 3 | within coordinates | ||||||
Rr378349 | regulatory region 378349 | 599 bp upstream | ||||||
Rr615578 | regulatory region 615578 | 296 bp distal | ||||||
Rr615579 | regulatory region 615579 | within coordinates | ||||||
Rr615580 | regulatory region 615580 | 194 bp proximal | ||||||
Tssr47495 | transcription start site region 47495 | 184 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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