rs33128393 SNP Detail

Summary

• ID
  rs33128393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24548500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACAGCTC TGCACAAATA
  TTTACATAGT TCCTCTGGGG CTTCGGAGAC ACCACACACA GGAGCAGGAG GCACCCTCCT
  GACACTGTCC AGGCCTAGGG CCTCTGAGGA AACAGCACCT CTCTACCCTC ATGGACAGGA
  AGCCCTCAGC AGCCCACCAC AGGGAAGCTA GGAGAAAAGT CCTTAGCAGA GACAGACAGA
  Y
  AGATAGACAG CTGGAGGCAG GCCCTGCCAG AAGCTACCAC CTGCCCCAGG CTCCAGACTA
  TACCAGATCC TGACCAGAAA AACAGGGCTA TCTATGCTCC CCAGAAGGGA ACACACCTTT
  AATCTTAGCA AGGCCAGCCT GGTCTACCTA GCTAGGATTA CAGAAATAAA AGGGGTTGGG
  GGATAAGCAC TCCAATTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45740871	mCV25227507	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148091786	ENSMUSSNP4124480	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33128393					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24548500 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	522 bp downstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	1027 bp downstream
Tssr50308	transcription start site region 50308	1048 bp downstream
Tssr50309	transcription start site region 50309	1070 bp downstream