rs33129948 SNP Detail

Summary

• ID
  rs33129948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31220317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CACCTCCTGG GGTTACAGTT
  Y
  ATCTCAACAT CTTTTCAAAT AAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39497598	mCV25212541	ABI	CRAMUS_MOUSE	f	SNP		T			C	C
ss60562811	NES16493428	PERLEGEN	MM_PANEL2	f	SNP		T	T	T			T	C		C	C	T	C		T
ss145453996	ENSMUSSNP899435	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				C
ss325358234	CHEV_17_31138288	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33129948					SNP	C	T	T	T	C	C	T	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562811	NES16493428	PERLEGEN	MM_PANEL	f	SNP	C/T
ss159831756	UOL_MMUSEQ_317	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31220317 () rs orientation: forward

Symbol	Name	Function Class
Tssr143635	transcription start site region 143635	593 bp upstream
Umodl1	uromodulin-like 1	within coordinates