rs33133360 SNP Detail

Summary

• ID
  rs33133360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATGTTA TTTCCCAGTT
  ATAAATCTTT GGTTTTATCT GTCAGTCGGT TTGACATTAC ATTGTTTTCT TGTTACCTAT
  ACAGCCAAAT GGACGGACTG TTGAAGTACC CGAGGATGAA GTTGTTAGAA ATCCCCGAAG
  TATAACTGCA AAACAAGCAC CAGAGACAGA CAAGAAAAAT GAAAAGGTAA GCTTGGGAAC
  R
  CATATGTACA AAGTTTTTAA TAAAGCTAAT GACATAAAAT TATGCTTTCA TGGTTAATAA
  GAGTGTAGTC TTCCATTTAA GAAAACTGCA AAATATGAAG TAGTCATGGG TAGGTTGTAA
  AGTTAAAGTT TTGTTTTGTT TTTAAAGAAG ACTATGTCAC CATTTTTTTT TTTAAAAACA
  TTACAGTGGT GTTAGTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49447182	NES12601652	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G	A	G	A	G
ss147537748	ENSMUSSNP3254600	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33133360					SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447182	NES12601652	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099746 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	69 bp downstream
Tssr133963	transcription start site region 133963	67 bp upstream