rs33133362 SNP Detail

Summary

• ID
  rs33133362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAATT CATTTATATA
  CACAAAACAC ACATCACAAA AACTCATTAG TCCAGTGAGA TTCAGATGGT ACAGGCATAT
  ATAAAAGCAA CCCTGTTCAT TTGGGTCAGG GAAGAATTTC ATTGTTGTAT ATGTTATTTC
  CCAGTTATAA ATCTTTGGTT TTATCTGTCA GTCGGTTTGA CATTACATTG TTTTCTTGTT
  W
  CCTATACAGC CAAATGGACG GACTGTTGAA GTACCCGAGG ATGAAGTTGT TAGAAATCCC
  CGAAGTATAA CTGCAAAACA AGCACCAGAG ACAGACAAGA AAAATGAAAA GGTAAGCTTG
  GGAACGCATA TGTACAAAGT TTTTAATAAA GCTAATGACA TAAAATTATG CTTTCATGGT
  TAATAAGAGT GTAGTCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49447184	NES12601651	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		A	A	A	T	A	A	A
ss147537743	ENSMUSSNP5847788	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33133362					SNP	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447184	NES12601651	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099620 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	34 bp upstream
Tssr133963	transcription start site region 133963	42 bp downstream