rs33133643 SNP Detail

Summary

• ID
  rs33133643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95539644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGTGTG TTTTCTTGGG
  ATTTGGGAGG TGAAGAGCGA TACTGGAGGT GTGATTGAGG GAAGGTTGGT GTGGGCCCCT
  GAGTTTGAAA GGGGCTCTGA CAAGGCTCAT TACATTGGGA GAGGGAGCAG GAATGGTGGA
  CACAGATGAC TGGTGGCCTT TGCTGGCTTC TGCCTGTCCT TTATAGCTAA TTCAAAAGAT
  R
  TGTCACCTTA TAGAAAATGA GAGATTTGGG AACTTGGTTA AATGGTGTGC TAACACCCAA
  AGCTTAGTCC AGACTCAGCA AGAATGGGGC CCCTTTTCAT TCTTTTTCCC TTCAGTTTCT
  ATTCCTAAGT TCTGTTTGTG TGGGAGAAGT GTGAGTTATT AGTAATAAGC AAAAGAAACT
  GGCCTTTCTG TCCCTGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775885	NES10750027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33133643					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775885	NES10750027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95539644 () rs orientation: forward

Symbol	Name	Function Class
Ensa	endosulfine alpha	231 bp downstream
Rr69362	regulatory region 69362	357 bp proximal
Rr73413	regulatory region 73413	1357 bp proximal
Rr82135	regulatory region 82135	within coordinates