rs33134106 SNP Detail

Summary

• ID
  rs33134106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTGCAC CAACATCCGC
  CTCAGGTTCA GGAAATCGCA GTGATGTGGG TTCTCCACTA GAGGGCGGAC CAGATAGCTT
  TGCGTTCAAC GCCACCCTTA GGCTCTGCTC TCTGGGAGTA CTTCACTAGT CTAGAGAAGA
  ACCCAGGATT TGCAGCCCAA GGACCCCTCT TGTGGCCTCT AGGAACTCCC AAGACTAGAG
  Y
  CCACCTCCAA CTTCACGTAT GAATTCAGAC CGAACTCCCT ACTGCTCTCA AAGCATGCCT
  GGCCTTACCC TCCACGGTAC CCCAGGAGTA GCGTCTTCCC CTCACTGGTC GGGTTCCATC
  CCTCACCACT TCACAAGACC CAACGACTGC GAAAGGGATG TTTTCCTATA GAACGGGAGT
  CAGGAGTCAC GTTGGCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261326	NES11577084	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134106					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261326	NES11577084	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	683 bp distal
Cpgi19732	CpG island 19732	106 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1303 bp downstream
Rr655746	regulatory region 655746	1876 bp distal
Rr655747	regulatory region 655747	129 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1346 bp downstream
Tssr69179	transcription start site region 69179	1329 bp downstream
Tssr69180	transcription start site region 69180	1023 bp downstream
Tssr74960	transcription start site region 74960	1373 bp upstream
Tssr74961	transcription start site region 74961	827 bp upstream
Tssr74962	transcription start site region 74962	557 bp upstream
Tssr74963	transcription start site region 74963	520 bp upstream
Tssr74964	transcription start site region 74964	487 bp upstream
Tssr74965	transcription start site region 74965	241 bp upstream
Tssr74966	transcription start site region 74966	147 bp upstream
Tssr74967	transcription start site region 74967	93 bp downstream