rs33134109 SNP Detail

Summary

• ID
  rs33134109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTCAGG AAATCGCAGT
  GATGTGGGTT CTCCACTAGA GGGCGGACCA GATAGCTTTG CGTTCAACGC CACCCTTAGG
  CTCTGCTCTC TGGGAGTACT TCACTAGTCT AGAGAAGAAC CCAGGATTTG CAGCCCAAGG
  ACCCCTCTTG TGGCCTCTAG GAACTCCCAA GACTAGAGCC CACCTCCAAC TTCACGTATG
  R
  ATTCAGACCG AACTCCCTAC TGCTCTCAAA GCATGCCTGG CCTTACCCTC CACGGTACCC
  CAGGAGTAGC GTCTTCCCCT CACTGGTCGG GTTCCATCCC TCACCACTTC ACAAGACCCA
  ACGACTGCGA AAGGGATGTT TTCCTATAGA ACGGGAGTCA GGAGTCACGT TGGCTCATCC
  TGGGCATAAT CCTCTTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261329	NES11577087	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134109					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261329	NES11577087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	705 bp distal
Cpgi19732	CpG island 19732	128 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1325 bp downstream
Rr655746	regulatory region 655746	1898 bp distal
Rr655747	regulatory region 655747	151 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1368 bp downstream
Tssr69179	transcription start site region 69179	1351 bp downstream
Tssr69180	transcription start site region 69180	1045 bp downstream
Tssr74960	transcription start site region 74960	1395 bp upstream
Tssr74961	transcription start site region 74961	849 bp upstream
Tssr74962	transcription start site region 74962	579 bp upstream
Tssr74963	transcription start site region 74963	542 bp upstream
Tssr74964	transcription start site region 74964	509 bp upstream
Tssr74965	transcription start site region 74965	263 bp upstream
Tssr74966	transcription start site region 74966	169 bp upstream
Tssr74967	transcription start site region 74967	71 bp downstream