rs33134112 SNP Detail

Summary

• ID
  rs33134112
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGGCTCT GCTCTCTGGG
  AGTACTTCAC TAGTCTAGAG AAGAACCCAG GATTTGCAGC CCAAGGACCC CTCTTGTGGC
  CTCTAGGAAC TCCCAAGACT AGAGCCCACC TCCAACTTCA CGTATGAATT CAGACCGAAC
  TCCCTACTGC TCTCAAAGCA TGCCTGGCCT TACCCTCCAC GGTACCCCAG GAGTAGCGTC
  K
  TCCCCTCACT GGTCGGGTTC CATCCCTCAC CACTTCACAA GACCCAACGA CTGCGAAAGG
  GATGTTTTCC TATAGAACGG GAGTCAGGAG TCACGTTGGC TCATCCTGGG CATAATCCTC
  TTTCTCAGCT TTCGCCTCCA CTTCCTGCTT CCTTGCCCCT GTCCACCTCC ACCTGTCAAA
  CCTTCATTTC TTCATTCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261332	NES11577089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134112					SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261332	NES11577089	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	779 bp distal
Cpgi19732	CpG island 19732	202 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1399 bp downstream
Rr655746	regulatory region 655746	1972 bp distal
Rr655747	regulatory region 655747	225 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1442 bp downstream
Tssr69179	transcription start site region 69179	1425 bp downstream
Tssr69180	transcription start site region 69180	1119 bp downstream
Tssr74960	transcription start site region 74960	1469 bp upstream
Tssr74961	transcription start site region 74961	923 bp upstream
Tssr74962	transcription start site region 74962	653 bp upstream
Tssr74963	transcription start site region 74963	616 bp upstream
Tssr74964	transcription start site region 74964	583 bp upstream
Tssr74965	transcription start site region 74965	337 bp upstream
Tssr74966	transcription start site region 74966	243 bp upstream
Tssr74967	transcription start site region 74967	within coordinates