rs33134234 SNP Detail

Summary

• ID
  rs33134234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCATCTA TAACTTCTGT
  TACAGGGATT TGATGCCTTC TGACCTCTCC AGACACATGG CCAATAGACA CAGGGCCAAT
  AGACATACAT GTAAGACAAA ACATTCACAC AATAAAAGTG AATAAAGACT TAAAAACAAA
  TTCATTTATA TACACAAAAC ACACATCACA AAAACTCATT AGTCCAGTGA GATTCAGATG
  R
  TACAGGCATA TATAAAAGCA ACCCTGTTCA TTTGGGTCAG GGAAGAATTT CATTGTTGTA
  TATGTTATTT CCCAGTTATA AATCTTTGGT TTTATCTGTC AGTCGGTTTG ACATTACATT
  GTTTTCTTGT TACCTATACA GCCAAATGGA CGGACTGTTG AAGTACCCGA GGATGAAGTT
  GTTAGAAATC CCCGAAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49447186	NES12601650	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G		G	A	G	A		G
ss147537732	ENSMUSSNP6645862	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss324918814	CHEV_15_34029097	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33134234					SNP	G	A	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447186	NES12601650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099488 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	166 bp upstream
Tssr133963	transcription start site region 133963	174 bp downstream