rs33134336 SNP Detail

Summary

• ID
  rs33134336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95591200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGAGCA AAGATGCTCC
  AGAGTGGGCT GGAGTCTCTT GTCAGGGGCA GCCAGCCATC TGGGGACCTG TGAGGACCTG
  GAGGTCTCCA GTGCCTCCTG CTCTGCTGGC TCCGGGGGAC AGGAGAGAAA GGAGGTGGGT
  GTCGTCGCTC TGCTCCCTGG GGACTGCTCC AACTTCCCGG GGAAGGTGGC ATTCGTGGCC
  Y
  AAGGGATCCC TGGAAAGACC TACTGTCTCC AAAAGAGGAG GTAGGTGCAG GGGTCCCTGT
  GTAGGAAGGA GCAGAACTAG TTCTGGGGAG CACTTCTGTC TGAGCAGTTC CAGACCTTGG
  AGTTTCAGCT GAGTGAGAAC GGGGTTCAGG GGGCTGCATG TGAGGGCCGT GCTTTTCAGA
  GGCCAGCTCT GTGCTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776236	NES10748004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134336					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776236	NES10748004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95591200 () rs orientation: forward

Symbol	Name	Function Class
Adamtsl4	ADAMTS-like 4	within coordinates
Gm65708	predicted gene, 65708	1177 bp downstream
Rr581015	regulatory region 581015	797 bp distal
Tssr34517	transcription start site region 34517	635 bp downstream
Tssr34518	transcription start site region 34518	1699 bp downstream