rs33134975 SNP Detail

Summary

• ID
  rs33134975
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACTGCGAA AGGGATGTTT
  TCCTATAGAA CGGGAGTCAG GAGTCACGTT GGCTCATCCT GGGCATAATC CTCTTTCTCA
  GCTTTCGCCT CCACTTCCTG CTTCCTTGCC CCTGTCCACC TCCACCTGTC AAACCTTCAT
  TTCTTCATTC TGCTTCTTGA ATTCTTCGTC CTCATCAGAG TCACACTCTG GGAACTGATA
  K
  ATGTTGATCT CCTCCTCTTT CAACTGGTCC CGGATCTCAG AGCAGATAGA AGGAGAAACG
  GACATTACAT GGCTAGAAAC AGTGGGGTAG ATAGAATGGG GTGATCAGAG AGAAAGAACG
  ATATGAAGGA CAAATGGTGA GAAATGGCCA CACAAGATGA CCAAAACCAA ACCTCAGAGA
  CATGATGGTG AGAAACTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261335	NES11577091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134975					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261335	NES11577091	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1027 bp distal
Cpgi19732	CpG island 19732	450 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1647 bp downstream
Rr655747	regulatory region 655747	473 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1690 bp downstream
Tssr69179	transcription start site region 69179	1673 bp downstream
Tssr69180	transcription start site region 69180	1367 bp downstream
Tssr74960	transcription start site region 74960	1717 bp upstream
Tssr74961	transcription start site region 74961	1171 bp upstream
Tssr74962	transcription start site region 74962	901 bp upstream
Tssr74963	transcription start site region 74963	864 bp upstream
Tssr74964	transcription start site region 74964	831 bp upstream
Tssr74965	transcription start site region 74965	585 bp upstream
Tssr74966	transcription start site region 74966	491 bp upstream
Tssr74967	transcription start site region 74967	239 bp upstream