rs33135397 SNP Detail

Summary

• ID
  rs33135397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:25944957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGAAAGGAC TAGGATAGCC CAAACCATGG GTTTGATACC CAGGTCTGCA TAAACCAGGA
  GTCGTGGCTT TATTCTGGTT GTAATGTCCA GCATGGTAAA AACAGTCATG GTAGGCTGGG
  AAAGAACTAC ACACTTAATC CTAGCACTTG GGAGACAGAT GTAGATGAAT TTCTGAGTTT
  GAGGCCAGCT AAGTCTAGAC AGTGAGTTAC AGGACAGCCA GGGCTACATA GAGAATCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCATACA
  Y
  ACACACACAC ACACACACAC ACACTCTCTC TCTCCAGGAA ACAAACAAAC AAACAAACAA
  ACAAACAAAC AAGGAGATAT ACATCTTTAA TTTCATAATT GGGGAGGCAA AAGCAGGAGG
  ATCAGAAATT TGAGACCAGT TTAACTAAGT AGTAAATAAT AGGCCAGCCT GGACAATGTG
  AGATCCTGTC TTAAAAACAG CACAAAACAA AAAACACACA GAAAGTGTTA ATAAATGAAA
  ATAAATTTAA GGAATTAATA ACTGCTGGAT ATGACATGAA AACACACATA GTATGGTGGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45742035	mCV22826768	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33135397					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25944957 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Rr608568	regulatory region 608568	565 bp distal
Tssr50419	transcription start site region 50419	555 bp downstream