rs33135600 SNP Detail

Summary

• ID
  rs33135600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95592885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCACCG CTACCCTCTG
  CCCCTTCCCT GCCCTAATGG AGACAGAGCT GGTCCTTTCC ACTGCTACCC CTCTTTCTTA
  CCTGCCCAGC CAAGATTCCA TTGCTCTTCC TGTGACTGCC CCTGGGCTGG GGAGCAGGGG
  ACAGGGTGGC TACTCTGGCA TCGGGGCTTG GAGGGTGCTC TGAGGAGGGA GGAGCATGGC
  R
  TTACCCCTCC AGCTATCTGG GGGGACTGAA GGGCTGTCTC AGCACAACAC CAACAGCCTG
  GAGGGGTGGG GGAGGAATGG TCCACCCCTT TAGGACCTAA GGGTGGGAGC AAGAAGGGAC
  GTTGTCTTTG TCATCTGCTA GAGGGTGGGG GGTCTGACCT CAGCCTCTTA GTTCAGTTTA
  GTCTCCTCCC TATGGCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776257	NES10747905	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33135600					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776257	NES10747905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95592885 () rs orientation: forward

Symbol	Name	Function Class
Adamtsl4	ADAMTS-like 4	within coordinates
Cpgi13518	CpG island 13518	1937 bp proximal
Rr581016	regulatory region 581016	1203 bp proximal
Tssr34517	transcription start site region 34517	1019 bp upstream
Tssr34518	transcription start site region 34518	14 bp downstream